以下均以人Hg38(GRCh38)版本为例
Ensembl
- https://asia.ensembl.org/Homo_sapiens/Info/Index
- Fasta: Homo_sapiens.GRCh38.dna.primary_assembly.fa.gz (https://ftp.ensembl.org/pub/release-109/fasta/homo_sapiens/dna/)
- GTF: Homo_sapiens.GRCh38.109.chr.gtf.gz (https://ftp.ensembl.org/pub/release-109/gtf/homo_sapiens/)
Gencode
- https://www.gencodegenes.org/human/
- Fasta: Genome sequence (GRCh38.p13) + ALL
- GTF: Comprehensive gene annotation + CHR
NCBI
UCSC
- Fasta: hg38.fa.gz (https://hgdownload.soe.ucsc.edu/goldenPath/hg38/bigZips/)
- GTF: http://genome.ucsc.edu/cgi-bin/hgTables