IGV webapp

Download IGV

https://igv.org/app-archive/

Create data directory

mkdir -p igv-webapp.2.13.5/resources/data (Put the data into this folder)

Start server by python3

cd igv-webapp.2.13.5
python3 -m http.server 9999

Mapping the server port under the Windows

win + r : cmd
ssh -N -f -L localhost:9999:localhost:9999 -p 22 user@server (Visit the localhost:9999 to use IGV)

IGV usage

1. Select the genome
2. Load data tracks by URL: Give the absolute path of data and data index
3. Zoom for viewing

IGV Windows Desktop

Installation of IGV

https://igv.org/doc/desktop/#DownloadPage/ (Select Java included version)